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chip seq
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Unable to annotate the differential peaks from DiffBind using ChIPseeker
chip seq
ChIPseeker
peak annotation
annotatePeak()
Diffbind
4.7 years ago
researcher
• 0
1
vote
8
replies
1.3k
views
Diffbind multiple blocking factor
diffbind
rory stark
chip seq
updated 3.6 years ago by
Rory Stark
★ 5.2k • written 4.1 years ago by
bioinfouser2
▴ 10
0
votes
1
reply
894
views
How to find sites with H3K27me3 loss?
Chip Seq
Histone
H3K27me3
macs
diffbind
4.7 years ago
researcher
• 0
0
votes
0
replies
447
views
How can I analyse ChIP-seq and BioID results and functionally grouping them
analyse
ChIP Seq
bioID
functional
grouping
4.4 years ago
rergin
• 0
4 results • Page
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Comment: Deseq2
by
Ram
▴ 210
Cross-posted on biostars: https://www.biostars.org/p/9596031/
Comment: SpliceWiz collateData error
by
giulia.nicoletto.1
• 0
Hi there, I am facing a similar error. When I try the collateData command collateData( Experiment = expr, reference_path = "./Referen…
Answer: Best way to describe DEseq2 design
by
SamGG
▴ 350
Hi, My own opinion. In the design `~ Batch`, ChemicalA_t1 is the intercept. So, all coefficients refer to this level as a reference. …
Answer: Deseq2
by
ATpoint
★ 4.2k
Ser the vignette https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html It covers prefiltering (and everyt…
Comment: Counter-directional LFC shrinkage
by
Michael Love
42k
Gene 1 is hard to predict given the paucity of data for the comparison of interest. What is happening is that the relatively low dispersion…
Votes
Answer: Deseq2
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: When should I correct for batch effects
Answer: When should I correct for batch effects
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